COVID-19 datasets
COVID-19 datasetsare public databases for sharing case data and medical information related to theCOVID-19 pandemic.
Aggregate statistics
[edit]United States
[edit]Volunteer/non-government
[edit]| Publisher | Date of first publication | In official use? | Update
Frequency |
Geographic
Level |
Timeseries | Testing
Sites |
Testing
Number |
Cases | Hospitalizations | Deaths | Vaccination
Sites |
Vaccination
Number |
Description |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Coders Against COVID/GISCorps[1] | March 22, 2020[2] | Yes, by FEMA[3]and State of California[4] | Daily | Point (lat/long) | Yes | Yes | No | No | No | No | Yes | No | A dataset of COVID-19 testing locations in the United States and Puerto Rico |
| USAFacts[5] | April 24, 2020[6] | Yes, by CDC[7] | Daily | County | Yes | No | No | Yes | Yes | No | No | A dataset of county-level coronavirus cases and deaths that is updated daily | |
| COVID Tracking Project[8] | March 7, 2020[9] | No | Daily | State | Yes | No | Yes | Yes | Yes | Yes | No | No | A volunteer-run database of testing and medical stats in the United States |
| Sentiment Analysis of users reviews on COVID-19 contact tracing mobile applications[10][11] | March 2021 | This dataset is intended to support sentiment analysis of users' reviews on COVID-19 contact tracing mobile applications. |
| Name | Geographic
Level |
Timeseries | Testing
Sites |
Testing
Number |
Cases | Hospitalizations | Deaths | Vaccination
Sites |
Vaccination
Number |
|---|---|---|---|---|---|---|---|---|---|
| COVID-19 Diagnostic Laboratory Testing (PCR Testing) Time SeriesArchived2021-03-12 at theWayback Machine | State | Yes | No | Yes | No | No | No | No | No |
| COVID-19 Reported Patient Impact and Hospital Capacity by FacilityArchived2021-03-12 at theWayback Machine | Point (lat/long) | Yes | No | No | No | Yes | No | No | No |
| COVID-19 Estimated Patient Impact and Hospital Capacity by StateArchived2021-03-12 at theWayback Machine | State | No | No | No | No | Yes | No | No | No |
| COVID-19 Reported Patient Impact and Hospital Capacity by StateArchived2021-03-08 at theWayback Machine | State | No | No | No | No | Yes | No | No | No |
| COVID-19 Reported Patient Impact and Hospital Capacity by State TimeseriesArchived2021-03-10 at theWayback Machine | State | Yes | No | No | No | Yes | No | No | No |
Global
[edit]- Johns HopkinsCoronavirus Resource Center: Global aggregated data including cases, testing, contact tracing, and vaccine development[12]
- World Health Organization(WHO) Coronavirus Disease Dashboard: a database of confirmed cases and deaths reported globally and broken down by region.[13]This database is part of the WHO Health Data Platform.[14]
- COVID-19 Africa Open Data Project: a volunteer-run database and dashboard reporting region, country and district level case counts, deaths, healthcare worker infections, healthcare services and urgent needs.[15]
Data hubs
[edit]- Health Data Research UKprovides a searchable registry of health data resources from the United Kingdom, includingCOVID-19 related datasets.
- NIH Open Access Datasets: TheNational Institutes of Healthprovide open-access data and computational resources related to COVID-19.[16]
- COVID-19 Open Research Dataset (CORD-19): TheSemantic Scholarproject of theAllen Institute for AIhosts CORD-19, a public dataset of academic articles about COVID-19 and related research.[17]The dataset is updated daily and includes both peer-reviewed articles and preprints.[18]CORD-19 was originally released on March 16, 2020, by researchers and leaders from the Allen Institute for AI,Chan Zuckerberg Initiative,Georgetown University's Center for Security and Emerging Technhology,Microsoft,and theNational Library of Medicine.[19]The dataset is created through the use oftext miningof the current research literature.[20]
Topic-specific and special-interest resources
[edit]Genomics
[edit]- Consensus genome data forSARS-CoV-2is available throughGISAIDfor registered users[21]and included in an interactivePhylogenetic treedashboard[22]onNextstrain,an open-source pathogengenomedata project.[23]
Imaging (Radiology)
[edit]- Characteristic imaging features on chestradiographsandcomputed tomography(CT) of people who are symptomatic include asymmetric peripheralground-glass opacitieswithoutpleural effusions.[24]TheUniversity of MontrealandMilacreated the "COVID-19 Image Data Collection" in March which is a public data repository of chest imaging.[25][26][27]The Medical Imaging Databank in Valencian Region released a large dataset of chest imaging from Spain.[28][29]TheItalian Radiological Societyis compiling an international online database of imaging findings for confirmed cases.[30]Online radiology case sharing platforms such asEuroradandRadiopaediaserve as platforms for sharing COVID-19 case data and imaging.[31][32]
References
[edit]- ^Torpey, Holly; Caballero, M.D., Jorge A. (eds.)."COVID-19 Testing Sites Data".GISCorps/Coders Against COVID Testing Site Data.Retrieved2020-12-14.
- ^"Volunteer group develops a COVID-19 testing location database for the U.S."TechCrunch.Retrieved2021-02-03.
- ^"App of the Week: COVID-19 Testing Sites Locator".Federal Emergency Management Agency (FEMA).Retrieved2021-02-03.
- ^"COVID-19 Testing Sites in California".www.arcgis.com.Retrieved2021-02-03.
- ^"US Coronavirus Cases and Deaths".USAFacts.org.2021-02-03.Retrieved2021-02-03.
- ^"Detailed Methodology and Sources: COVID-19 Data".USAFacts.Retrieved2021-02-03.
- ^"Coronavirus Outbreak Stats & Data".USAFacts.Retrieved2021-02-03.
- ^Stephens, Autumn (21 August 2020)."Tracking Star in Oakland".Diablo Magazine.Retrieved2020-09-18.
- ^"About Us".The COVID Tracking Project.Retrieved2021-02-03.
- ^Ahmad, Kashif (2021)."A Benchmark Dataset for Sentiment Analysis of Users' Reviews on COVID-19 Contact Tracing Applications".Harvard Dataverse.doi:10.7910/DVN/1RDRCM.
{{cite journal}}:Cite journal requires|journal=(help) - ^Ahmad, Kashif (2021). "Sentiment Analysis of Users' Reviews on COVID-19 Contact Tracing Apps with a Benchmark Dataset".arXiv:2103.01196[cs.CL].
- ^"Home".Johns Hopkins Coronavirus Resource Center.Retrieved2020-09-18.
- ^"WHO Coronavirus Disease (COVID-19) Dashboard".covid19.who.int.Retrieved2020-09-18.
- ^"World Health Data Platform - WHO".www.who.int.Retrieved2020-09-18.
- ^"COVID-19 Africa Open Data".Retrieved16 November2020.
- ^"Open-Access Data and Computational Resources to Address COVID-19 | Data Science at NIH".datascience.nih.gov.Retrieved2020-10-13.
- ^"CORD-19".Semantic Scholar.Retrieved2020-10-13.
- ^"Analysis of COVID-19 publications identifies research gaps".EurekAlert!.Retrieved2020-10-13.
- ^"Call to Action to the Tech Community on New Machine Readable COVID-19 Dataset".whitehouse.gov.Retrieved2020-10-13– viaNational Archives.
- ^"NLM Leverages Data, Text Mining to Sharpen COVID-19 Research Databases".governmentciomedia.com.11 May 2020.Retrieved2020-10-13.
- ^"GISAID".www.gisaid.org.Retrieved29 December2020.
- ^"Nexstrain SARS-CoV-2 Dashboard".nextstrain.org.Retrieved29 December2020.
- ^"Nextstrain".docs.nextstrain.org.Retrieved29 December2020.
- ^Li Y, Xia L (March 2020)."Coronavirus Disease 2019 (COVID-19): Role of Chest CT in Diagnosis and Management".American Journal of Roentgenology.214(6): 1280–1286.doi:10.2214/AJR.20.22954.PMID32130038.S2CID212416282.
- ^"COVID-19 related projects".Mila.COVID-19 image data collection.Retrieved12 July2020.
- ^"COVID-19 image data collection".GitHub.Retrieved12 July2020.
- ^Cohen, Joseph (25 March 2020). "COVID-19 image data collection".arXiv:2003.11597[eess.IV].
- ^"BIMCV-COVID19, Datasets related to COVID19's pathology course".Medical Imaging Databank in Valencian Region Medical.Retrieved12 July2020.
- ^de la Iglesia Vayá, Maria (1 June 2020). "BIMCV COVID-19+: a large annotated dataset of RX and CT images from COVID-19 patients".arXiv:2006.01174[eess.IV].
- ^"COVID-19 Database".Società Italiana di Radiologia Medica e Interventistica(in Italian).Retrieved2020-03-11.
- ^"Pneumothorax and pneumomediastinum: a rare complication in the evolution of COVID-19 pneumonia".Eurorad.Retrieved12 July2020.
- ^Bell, Daniel; Knipe, Henry."COVID-19 (summary)".Radiopaedia.Retrieved12 July2020.