Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Genome wide orthology inference and dNdS estimation
Program for estimating dN/dS in overlapping genes (OLGs)
Fast heuristic methods of detecting adaptive evolution in protein-coding genes.
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.
Evolutionary genomics of chromosomal inversions in Atlantic herring
EDEN: evolutionary dynamics within environments
It is a powerful tool for aligning nucleotide sequences based on protein alignments, translating nucleotide sequences to protein, and generating phylogenetic trees using Biopython.
the user interface for EDEN - Evolutionary Dynamics within Environments
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