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@AllenCellModeling

Allen Institute for Cell Science - Modeling

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  1. pytorch_fnet pytorch_fnetPublic

    Three dimensional cross-modal image inference

    Python 151 61

  2. pytorch_integrated_cell pytorch_integrated_cellPublic

    Integrated Cell project implemented in pytorch

    Python 43 11

  3. aicsimageio aicsimageioPublic

    Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

    Python 201 51

  4. aicspylibczi aicspylibcziPublic

    Forked fromelhuhdron/pylibczi

    Python module utilizing libCZI for reading Zeiss CZI files.

    C++ 36 7

  5. cookiecutter-pypackage cookiecutter-pypackagePublic

    A cookiecutter template to generate a new Python package.

    Python 22 7

Repositories

Showing 10 of 76 repositories
  • fish_morphology_code Public

    Basic code and automated workflows to produce analysis friendly data from annotated FISH images

    AllenCellModeling/fish_morphology_code’s past year of commit activity
    Python 3 2 5 3 UpdatedSep 16, 2024
  • cyto-dl Public
    AllenCellModeling/cyto-dl’s past year of commit activity
    Python 12 5 10 0 UpdatedAug 30, 2024
  • aicsimageio Public

    Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

    AllenCellModeling/aicsimageio’s past year of commit activity
    Python 201 51 8 7 UpdatedAug 22, 2024
  • napari-aicsimageio Public

    Multiple file format reading directly into napari using pure Python

    AllenCellModeling/napari-aicsimageio’s past year of commit activity
    Python 33 GPL-3.0 9 14 (3 issues need help) 3 UpdatedJul 21, 2024
  • aicspylibczi Public Forked from elhuhdron/pylibczi

    Python module utilizing libCZI for reading Zeiss CZI files.

    AllenCellModeling/aicspylibczi’s past year of commit activity
    C++ 36 GPL-3.0 8 13 0 UpdatedJul 11, 2024
  • pointcloudutils Public
    AllenCellModeling/pointcloudutils’s past year of commit activity
    Python 0 0 0 0 UpdatedApr 17, 2024
  • nvidia-docker-stats Public

    Monitor nvidia gpu unit load associated with docker spawned processes

    AllenCellModeling/nvidia-docker-stats’s past year of commit activity
    Python 29 GPL-3.0 13 1 2 UpdatedOct 1, 2023
  • aics_dask_utils Public

    Utility functions commonly used by AICS projects for interacting with Dask

    AllenCellModeling/aics_dask_utils’s past year of commit activity
    Python 1 0 2 0 UpdatedAug 10, 2023
  • aicsimageprocessing Public archive

    A generalized scientific image processing module from the Allen Institute for Cell Science.

    AllenCellModeling/aicsimageprocessing’s past year of commit activity
    Python 2 1 1 1 UpdatedAug 2, 2023
  • CVAE_testbed Public

    A research testbed on conditional variational autoencoders using Gaussian distributions as input

    AllenCellModeling/CVAE_testbed’s past year of commit activity
    Jupyter Notebook 3 2 0 2 UpdatedJul 6, 2023
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