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1. genomeGTFtools genomeGTFtoolsPublic

   convert various features into a GFF-like file for use in genome browsers

   Python 69 27

2. lavaLampPlot lavaLampPlotPublic

   instructions, python and R code for generating lava lamp plots of kmer coverage

   Python 6

3. supermatrix supermatrixPublic

   scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms

   Python 9 4

4. pdbcolor pdbcolorPublic

   Python code to color a PDB structure based on parameters from a multiple sequence alignment

   Python 32 7

5. graphphylo graphphyloPublic

   visualization of phylogenetic output files

   R 13 2

6. genome-size genome-sizePublic

   examination of genome size across all kingdoms

   R 4 1