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@dlsucomet @dlsudatasci @DLSU-CCAPDEV @STSWENG-T1-AY2122-AWS-CodeBuild @bioinfodlsu

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memgonzales/README.md

Hello 👋 I'm Mark Edward

I am a Bachelor of Science – Master of Science in Computer Science (Honors) student at De La Salle University, Manila, Philippines. I enjoy working on challenges that bring together AI and applied computing.

I have had the opportunity to work on projects with the Asian Development Bank and the International Rice Research Institute. In 2024, I received the Singapore International Pre-Graduate Award from the Agency for Science, Technology and Research (A*STAR), Singapore. A year prior, I was conferred the second prize in the Magsaysay Future Engineers/Technologists Award by the National Academy of Science and Technology, Philippines. Here are some of my recent publications:

  • 🧬 Bioinformatics
    • Web dashboard and bioinformatics pipeline for rice genome analysis
      GigaScience (Code | Paper)
    • Predicting which bacteria are attacked by "good" viruses using protein language models
      PLOS ONE (Code | Paper)
  • 👁️ Computer Vision
    • Lightweight deep learning model for detecting camouflaged objects
      2024 IEEE 48th Annual Computers, Software, and Applications Conference (Paper)
    • Lightweight deep learning model for detecting mirrors and reflective surfaces
      2023 International Conference in Central Europe on Computer Graphics, Visualization and Computer Vision (Code | Paper)
  • 🗣️ Natural Language Processing
    • Tracking the evolution of Filipino word meanings using sentence embeddings and network science
      2023 International Conference on Asian Language Processing (Code | Paper)
  • 💻 Programming Language Design and Implementation
    • Novice-friendly programming language for 2D drawing and animation
      2024 Philippine Computing Science Congress (Code | Paper)Awarded Best Student Paper
  • 🛢️ Database Design and Data Visualization
    • Transforming chatbot dialogues into a data mart schema for data visualization
      2023 Philippine Computing Science Congress (Paper)

I have also worked on software engineering projects:

  • 🎨 Artemis. An art-sharing Android app where the community of users can post, bookmark, and provide feedback on members' works, as well as share these artworks on their Facebook accounts
  • Powerzone Inventory. A web-based inventory, transaction, and delivery management system for a fuel company in Bicol, Philippines

Apart from coding, I am passionate about sharing and learning bits and bytes about tech. Since 2017, I have been a mentor for the Asian MathSci League, Inc. (AMSLI), an organization that trains and selects representatives for international math and informatics competitions. I designed the curriculum and wrote handouts for its advanced programming classes.

Since 2021, I have been contributing questions to the International Bebras Challenge on Informatics and Computational Thinking, an annual contest joined by over 80 participating countries. My 2023 problem proposal was awarded Best Task, and my 2022 and 2024 proposals were also nominated for this recognition.

I also enjoy competitive programming. In the 2022 International Collegiate Programming Contest (ICPC) Asia-Manila Regionals, our team ranked fifth and was recognized as the top Philippine team and the first to solve a problem.

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  1. bioinfodlsu/phage-host-prediction bioinfodlsu/phage-host-prediction Public

    Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding proteins of phages. It presents improvements over using handcrafted…

    Jupyter Notebook 12 2

  2. sliding-puzzle sliding-puzzle Public

    8-puzzle game that features a walkthrough of the optimal solution and allows users to customize the tiles using photos from their Gallery

    Kotlin 11 8

  3. meta-learning-clustering meta-learning-clustering Public

    Presented at the 2022 IEEE Region 10 Conference (TENCON 2022). Our main contribution is twofold: (1) the construction of a meta-learning model for recommending a distance metric for k-means cluster…

    Jupyter Notebook 3

  4. mirror-segmentation mirror-segmentation Public

    Presented at the 2023 International Conference in Central Europe on Computer Graphics, Visualization and Computer Vision (WSCG 2023). Lightweight mirror segmentation CNN that uses an EfficientNet b…

    Python 2

  5. medical-expert-ehrlich medical-expert-ehrlich Public

    Backward-chaining medical expert system that specializes in selected autoimmune diseases and employs MYCIN-style computations to handle uncertainty

    Prolog 7

  6. bioinfodlsu/rice-pilaf bioinfodlsu/rice-pilaf Public

    Published in GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice…

    Python 1 1