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248 Open 451 Closed
248 Open 451 Closed
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Issues list

Haplotypecaller exit status 402
#1687 openedOct 14, 2024by janejajajuana
5
No status is 0 - but contains tumor only sample error message bug Something isn't working
#1685 openedOct 11, 2024by maxulysse
1
Issue: FASTQC Process Fails with Exit Code 140 in nf-core/sarek Pipeline Using Singularity bug Something isn't working
#1683 openedOct 10, 2024by SirAymane
Mutations called by Mutect2 in paired mode are not annotated by VEP bug Something isn't working
#1679 openedOct 8, 2024by Janzulene
terminated for an unknown reason -- Likely it has been terminated by the external system question Further information is requested
#1676 openedOct 7, 2024by fan040
2
Pipeline does not stop immediately, when non-unique samples are provided in the samplesheet bug Something isn't working
#1674 openedOct 3, 2024by milcs40
Read data length does not match expected size - bytes read: 2756; expected: 16013759 bug Something isn't working
#1672 openedOct 2, 2024by maxulysse
1
Implementation of Indel and Multiallelic Variant Normalization in Sarek Pipeline enhancement New feature or request
#1666 openedSep 27, 2024by Patricie34
Coverage and Depth calculations bug Something isn't working
#1659 openedSep 19, 2024by jbague
1
Wrong sample names in multiqc general table bug Something isn't working
#1658 openedSep 19, 2024by LouisLeNezet
3
A USER ERROR has occurred: Bad input: Sample $name is not in BAM header: [...] bug Something isn't working
#1655 openedSep 18, 2024by VivianRobin
6
use custom snpeff database, such as Candian.aruis bug Something isn't working
#1654 openedSep 16, 2024by ybdong919
16
Update the metro map with lofreq before next release
#1651 openedSep 12, 2024by maxulysse
Add pattern for all reference files enhancement New feature or request
#1650 openedSep 12, 2024by maxulysse
error when use custom reference bug Something isn't working
#1649 openedSep 12, 2024by ybdong919
8
variant_calling DO NOT PROCESS bug Something isn't working
#1648 openedSep 12, 2024by torres-HI
2
error running BQSR: cannot remove tmp file bug Something isn't working
#1645 openedSep 4, 2024by jdownie2389
Mutect2 error bug Something isn't working
#1644 openedSep 4, 2024by yannic-chen
9
Sarek How Tos
#1643 openedSep 3, 2024by edmundmiller
A question with hg19 bug Something isn't working
#1637 openedAug 29, 2024by jbague
Process execution failed due to exceeding the allocated runtime limit I do get the following error
#1634 openedAug 27, 2024by TILccit
3
AGeNT enhancement New feature or request
#1630 openedAug 26, 2024by RP-Bioinfo
Avoid misleading error messages concerning sample-sheets bug Something isn't working
#1629 openedAug 26, 2024by asp8200
2
cnvkitoutput files are missing bug Something isn't working
#1625 openedAug 19, 2024by bounlu
8
Bug introduced in3.4.1causes premature stop of the pipeline bug Something isn't working
#1622 openedAug 14, 2024by bounlu 3.5
@bounlu
ProTip! Exclude everything labeledbugwith-label:bug.