Thomas Cavalier-Smith

Thomas Cavalier-Smith(21 October 1942 – 19 March 2021), English evolutionary biologist. Spouse of British protistologistEma E-Yung Chao.

IPNI standard form:Caval.-Sm.

Taxon names authored

(List may be incomplete)

• 405 taxon names authored byThomas Cavalier-Smith

Publications

(List may be incomplete)

1981

• Cavalier-Smith, T.1981. Eukaryote kingdoms: seven or nine?Biosystems14(3–4): 461–481.DOI:10.1016/0303-2647(81)90050-2.PMID 7337818.Reference page.

1984

• Cavalier-Smith, T.Feb. 1984 [‘1983’]. The kingdom Protozoa: classification and phylogeny.Protistologica19: 472.

1986

• Cavalier-Smith, T.1986. The kingdom Chromista: origin and systematics.Progress in phycological research4: 309–347. (Bristol: Biopress Ltd.)Reference page.

1987

• Cavalier-Smith, T.1987. The origin of eukaryote and archaebacterial cells.Annals of the New York Academy of Sciences503: 17–54.DOI:10.1111/j.1749-6632.1987.tb40596.x

1990

• Cavalier-Smith, T.1990 [ "1989" ]. The Kingdom Chromista.In:Green, J.C., Leadbeater, B.S.C., & Diver, W.L.(eds),The Chromophyte Algae. Problems and Perspectives.Oxford: Clarendon Press, pp. 381–407. (The Systematics Association Special Volume38: 381–407).Reference page.

1991

• Cavalier-Smith, T.1991. Archaemoebae: the ancestral eukaryotes?BioSystems25: 25–38.

1992

• Cavalier-Smith, T.1992 [ "1991" ]. Cell diversification in heterotrophic flagellates. In:Patterson, D.J. & Larsen, J.(eds.),The Biology of Free-living Heterotrophic Flagellates.Oxford University Press, pp. 113-131.

1993

• Cavalier-Smith, T.1993. The origin, losses and gains of chloroplasts. In:Origins of plastids: symbiogenesis, prochlorophytes, and the origins of chloroplasts.(Lewin, R.A.Eds), pp. 291–349. New York: Chapman and Hall.DOI:10.1007/978-1-4615-2818-0_15.Reference page.
• Cavalier-Smith, T.1993. Kingdom Protozoa and its 18 phyla.Microbiological Reviews57(4): 953–994.DOI:10.1128/mr.57.4.953-994.1993.PMID:8302218.Reference page.
• Cavalier-Smith, T.1993. The Protozoan phylum Opalozoa.Journal of Eukaryotic Microbiology40(5): 609–615.DOI:10.1111/j.1550-7408.1993.tb06117.xReference page.
• Allsopp, B.A.,Baylis, H.A.,Allsopp, M.,Cavalier-Smith, T.,Bishop, R.P.,Carrington, D.M.,Sohanpal, B.&Spooner, P.1993. Discrimination between six species ofTheileriausing oligonucleotide probes which detect small subunit ribosomal RNA sequences.Parasitology107(Pt 2): 157–65.DOI:10.1017/s0031182000067263.
• Cavalier-Smith, T.1993. Percolozoa and the symbiotic origin of the metakaryote cell. In:SATO S., ISHIDA M., ISHIKAWA H.(eds),Endocytobiology V.Proceedings of the 5th International Colloquium on Endocytobiology and Symbiosis, Kyoto, June 23-27, 1992. Tübingen: Tübingen University Press, 399–406.

1994

• Cavalier-Smith, T.,Allsopp, M.T.E.P.&Chao, E.E.1994. Thraustochytrids are chromists, not Fungi: 18s rRNA signatures of Heterokonta.Philosophical Transactions of the Royal Society B: Biological Sciences339: 139-146.

1995

• Cavalier-Smith, T.1995. Zooflagellate phylogeny and classification.Tsitologiya37(11): 1010–1029.Reference page.
• Cavalier-Smith, T.&Chao, E.E.1995. The opalozoanApusomonasis related to the common ancestor of animals, fungi, and choanoflagellates.Proceedings: biological sciences261 (1360): 1–6.JSTOR
• Cavalier-Smith, T.,Chao, E.E.&Allsopp, M.T.E.P.1995. Ribosomal RNA evidence for chloroplast loss within Heterokonta: pedinellid relationships and a revised classification of ochristan algae.Archiv für Protistenkunde145(3–4): 209–220.DOI:10.1016/S0003-9365(11)80316-7.Reference page.

1996

• Cavalier-Smith, T.,Chao, E.E.,Thompson, C.E.,&Hourihane, S.L.1996.Oikomonas,a distinctive zooflagellate related to chrysomonads.Archiv für Protistenkunde146(3–4): 273–279.DOI:10.1016/S0003-9365(96)80014-5Reference page.
• Cavalier-Smith, T.&Allsopp, M.T.E.P.1996.Corallochytrium,an Enigma tic non-flagellate protozoan related to choanoflagellates.European Journal of Protistology32(3): 306–310.DOI:10.1016/S0932-4739(96)80053-8.Reference page.

1997

• Cavalier-Smith, T.1997. Cell and genome coevolution: facultative anaerobiosis, glycosomes and kinetoplastan RNA editing.Trends in Genetics13(1): 6–9.DOI:10.1016/s0168-9525(96)30116-9
• Cavalier-Smith, T.1997. Sagenista and Bigyra, two phyla of heterotrophic heterokont chromists.Archiv für Protistenkunde148(3): 253–267.DOI:10.1016/S0003-9365(97)80006-1.Reference page.
• Cavalier-Smith, T.1997. Amoeboflagellates and mitochondrial cristae in eukaryote evolution: megasystematics of the new protozoan subkingdoms Eozoa and Neozoa.Archiv für Protistenkunde147(3–4): 237–258.DOI:10.1016/S0003-9365(97)80051-6.Reference page.
• Cavalier-Smith, T.&Chao, E.E.1997. Sarcomonad ribosomal RNA sequences, rhizopod phylogeny, and the origin of euglyphid amoebae.Archiv für Protistenkunde147(3–4): 227–236.DOI:10.1016/S0003-9365(97)80050-4.
• McFadden, G.I.,Gilson, P.R.,Douglas, S.E.,Cavalier-Smith, T.,Hofmann, C.J.,Maier, U.G.1997. Bonsai genomics: sequencing the smallest eukaryotic genomes.Trends in Genetics13(2): 46–9.DOI:10.1016/s0168-9525(97)01010-x

1998

• Cavalier-Smith, T.1998. A revised six-kingdom system of life.Biological Reviews73(3): 203–266.DOI:10.1017/s0006323198005167PDF FreeReference page.

1999

• Cavalier-Smith, T.1999. Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree.Journal of Eukaryotic Microbiology46(4): 347–366.DOI:10.1111/j.1550-7408.1999.tb04614.x.
• Ishida, K.,Green, B.R.&Cavalier-Smith, T.1999. Diversification of a chimaeric algal group, the chlorarachniophytes: phylogeny of nuclear and nucleomorph small-subunit rRNA genes.Molecular Biology and Evolution16(3): 321.DOI:10.1093/oxfordjournals.molbev.a026113

2002

• Cavalier-Smith, T.2002. The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification.International Journal of Systematic and Evolutionary Microbiology52(Pt 1):7-76.DOI:10.1099/00207713-52-1-7.Reference page.
• Cavalier-Smith, T.2002. The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa.International Journal of Systematic and Evolutionary Microbiology52(2): 297–354.DOI:10.1099/00207713-52-2-297Reference page.

2003

• Cavalier-Smith, T.2003. The excavate protozoan phyla MetamonadaGrasséemend. (Anaeromonadea, Parabasalia,Carpediemonas,Eopharyngia) and Loukozoa emend. (Jakobea,Malawimonas): their evolutionary affinities and new higher taxa.International Journal of Systematic and Evolutionary Microbiology53: 1741–1758.DOI:10.1099/ijs.0.02548-0Reference page.
• Cavalier-Smith T.2003. Protist phylogeny and the high-level classification of Protozoa.European Journal of Protistology39: 338–348.DOI:10.1078/0932-4739-00002Reference page.
• Cavalier-Smith, T.&Chao, E.E.2003. Phylogeny and classification of phylum Cercozoa (Protozoa).Protist154(3–4): 341–358.PMID:14658494DOI:10.1078/143446103322454112Reference page.

2004

• Cavalier-Smith, T.2004. Chromalveolate diversity and cell megaevolution: interplay of membranes, genomes and cytoskeleton.In:Hirt, R. P. & Horner, D. S.(eds),Organelles, genomes and eukaryote phylogeny. An evolutionary synthesis in the age of genomics.Oxford: Clarendon Press, pp. 75–108. (The Systematics Association Special Volume68: 75–108).Reference page.
• Cavalier-Smith, T.,Chao, E.E.-Y.&Oates, B.2004. Molecular phylogeny of Amoebozoa and the evolutionary significance of the unikontPhalansterium.European Journal of Protistology40(1): 21–48.DOI:10.1016/j.ejop.2003.10.001Reference page.
• Cavalier-Smith, T.&Chao, E.E.-Y.2004. Protalveolate phylogeny and systematics and the origins of Sporozoa and dinoflagellates (phylum Myzozoa nom. nov.).European Journal of Protistology40(3): 185–212.DOI:10.1016/j.ejop.2004.01.002Reference page.
• Bass, D.&Cavalier-Smith, T.2004. Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa).International Journal of Systematic and Evolutionary Microbiology54(6): 2393–2404.DOI:10.1099/ijs.0.63229-0Reference page.

2006

• Cavalier-Smith, T.2006. Rooting the tree of life by transition analyses.Biology Direct1: 19.DOI:10.1186/1745-6150-1-19
• Cavalier-Smith, T.&Chao, E.E.-Y.2006. Phylogeny and megasystematics of phagotrophic heterokonts (Kingdom Chromista).Journal of Molecular Evolution62(4): 388–420.DOI:10.1007/s00239-004-0353-8Reference page.
• Karpov, S.A.,Bass, D.,Mylnikov, A.P.&Cavalier-Smith, T.2006. Molecular phylogeny of Cercomonadidae and kinetid patterns ofCercomonasandEocercomonasgen. nov. (Cercomonadida, Cercozoa).Protist157(2): 125–158.DOI:10.1016/j.protis.2006.01.001Reference page.

2008

• Shalchian-Tabrizi, K.,Minge, M.A.,Espelund, M.,Orr, R.,Ruden, T.,Jakobsen, K.S.&Cavalier-Smith, T.2008. Multigene phylogeny of choanozoa and the origin of animals.PLoS ONE3(5): e2098.DOI:10.1371/journal.pone.0002098.Reference page.
• Cavalier-Smith T.&Nikolaev S.2008. The ZooflagellatesStephanopogonandPercolomonasare a Clade (Class Percolatea: Phylum Percolozoa).The Journal of Eukaryotic Microbiology55(6): 501–509.PMID:19120795DOI:10.1111/j.1550-7408.2008.00356.xReference page.
• Cavalier-Smith, T.,Lewis, R.,Chao, E.E.-Y.,Oates, B.&Bass, D.2008. Morphology and phylogeny ofSainouron acronematicasp. n. and the ultrastructural unity of Cercozoa.Protist159(4): 591–620.DOI:10.1016/j.protis.2008.04.002Reference page.
• Cavalier-Smith, T.,Chao, E.E.,Stechmann, A.,Oates, B.&Nikolaev, S.2008. Planomonadida ord. nov. (Apusozoa): ultrastructural affinity withMicronuclearia podoventralisand deep divergences withinPlanomonasgen. nov.Protist159: 535–562.DOI:10.1016/j.protis.2008.06.002

2009

• Cavalier-Smith, T.2009. Megaphylogeny, Cell Body Plans, Adaptive Zones: Causes and Timing of Eukaryote Basal Radiations.Journal of Eukaryotic Microbiology56(1): 26–33.DOI:10.1111/j.1550-7408.2008.00373.x
• Cavalier-Smith, T.,Lewis, R.,Chao, E.E.-Y.,Oates, B.&Bass, D.2009.Helkesimastix marinan. sp. (Cercozoa: Sainouroidea superfam. n.) a gliding zooflagellate of novel ultrastructure and unusual ciliary behaviour.Protist160(3): 452–459.DOI:10.1016/j.protis.2009.03.003Reference page.
• Bass, D.,Howe, A.T.,Mylnikov, A.P.,Vickerman, K.,Chao, E.E.-Y.,Smallbone, J.E.,Snell, J.,Cabral Jr, C.,&Cavalier-Smith, T.2009. Phylogeny and classification of Cercomonadida (Protozoa, Cercozoa):Cercomonas, Eocercomonas, Paracercomonas,andCavernomonasgen. nov.Protist160(4): 483–521.DOI:10.1016/j.protis.2009.01.004Reference page.
• Minge, M.A.,Silberman, J.D.,Orr, R.J.S.,Cavalier-Smith, T.,Shalchian-Tabrizi, K.,Burki, F.,Skjæveland, A.&Jakobsen, K.S.2009. Evolutionary position of breviate amoebae and the primary eukaryote divergence.Proceedings of the Royal Society(B)276: 597–604.DOI:10.1098/rspb.2008.1358

2010

• Cavalier-Smith, T.2010. Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree.Biology Letters6(3): 342–345.DOI:10.1098/rsbl.2009.0948.Reference page.
• Fiore-Donno, A.M.,Kamono, A.,Chao, E.E.,Fukui, M.&Cavalier-Smith, T.2010. Invalidation ofHyperamoebaby Transferring its Species to Other Genera of Myxogastria.Journal of Eukaryotic Microbiology57: 189–196.DOI:10.1111/j.1550-7408.2009.00466.x

2011

• Howe, A.T.,Bass, D.,Scoble, J.M.,Lewis, R.,Vickerman, K.,Arndt, H.&Cavalier-Smith, T.2011. Novel cultured protists identify deep-branching environmental DNA clades of Cercozoa: new generaTremula, Micrometopion, Minimassisteria, Nudifila, Peregrinia.Protist162(2): 332–372.DOI:10.1016/j.protis.2010.10.002Reference page.

2012

• Cavalier-Smith, T.&Karpov, S.A.2012.Paracercomonaskinetid ultrastructure, origins of the body plan of Cercomonadida, and cytoskeleton evolution in Cercozoa.Protist163(1): 47–75.Abstract.DOI:10.1016/j.protis.2011.06.004Reference page.
• Cavalier-Smith, T.,&Oates, B.2012. Ultrastructure ofAllapsa vibransand the body plan of Glissomonadida (Cercozoa).Protist163(2): 165-187.

2013

• Cavalier-Smith, T.2013. Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa.European Journal of Protistology49(2): 115–178.DOI:10.1016/j.ejop.2012.06.001Reference page.
• Cavalier-Smith, T.&Scoble, J.M.2013. Phylogeny of Heterokonta:Incisomonas marina,a uniciliate gliding opalozoan related toSolenicola(Nanomonadea), and evidence that Actinophryida evolved from raphidophytes.European Journal of Protistology49: 328–353.DOI:10.1016/j.ejop.2012.09.002Researchgate.Reference page.
• Yabuki, A.,Ishida, K.-I.&Cavalier-Smith, T.2013.Rigifila ramosan. gen., n. sp., a filose apusozoan with a distinctive pellicle, is related toMicronuclearia.Protist,164(1): 75–88.DOI:10.1016/j.protis.2012.04.005Reference page.

2014

• Scoble, J.M.&Cavalier-Smith, T.2014. Scale evolution in Paraphysomonadida (Chrysophyceae): sequence phylogeny and revised taxonomy ofParaphysomonas,new genusClathromonas,and 25 new species.European Journal of Protistology50(5): 551–592.DOI:10.1016/j.ejop.2014.08.001Reference page.
• Scoble, J.M.&Cavalier-Smith, T.2014. Scale evolution, sequence phylogeny, and taxonomy of thaumatomonad Cercozoa: 11 new species and new generaScutellomonas, Cowlomonas, ThaumatospinaandOvaloplaca.European Journal of Protistology50(3): 270–313.DOI:10.1016/j.ejop.2013.12.005Reference page.

2015

• Ruggiero, M.A.,Gordon, D.P.,Orrell, T.M.,Bailly, N.,Bourgoin, T.,Brusca, R.C.,Cavalier-Smith, T.,Guiry, M.D.&Kirk, P.M.2015. A Higher Level Classification of All Living Organisms.PLoS ONE10(4): e0119248DOI:10.1371/journal.pone.0119248.[Correction in 10(6): e0130114DOI:10.1371/journal.pone.0130114.]Reference page.
• Cavalier-Smith, T.,Chao, E.E.&Lewis, R.2015. Multiple origins of Heliozoa from flagellate ancestors: New cryptist subphylum Corbihelia, superclass Corbistoma, and monophyly of Haptista, Cryptista, Hacrobia and Chromista.Molecular Phylogenetics and Evolution93: 331–362.DOI:10.1016/j.ympev.2015.07.004Reference page.
• Cavalier-Smith, T.,Fiore-Donno, A.M.,Chao, E.,Kudryavtsev, A.,Berney, C.,Snell, E.A.&Lewis, R.2015 (Print), 2014 (Online). Multigene phylogeny resolves deep branching of Amoebozoa.Molecular Phylogenetics and Evolution83: 293–304.DOI:10.1016/j.ympev.2014.08.011.Reference page.

2016

• Cavalier-Smith, T.2016. Higher classification and phylogeny of Euglenozoa.European Journal of Protistology56: 250–276.DOI:10.1016/j.ejop.2016.09.003.PMID:27889663.Reference page.
• Cavalier-Smith, T.,Chao, E.E.-Y.&Vickerman, K.2016. New phagotrophic euglenoid species (new genusDecastava;Scytomonas saepesedens;Entosiphon oblongum), Hsp90 introns, and putative euglenoid Hsp90 pre-mRNA insertional editing.European Journal of Protistology56: 147–170.DOI:10.1016/j.ejop.2016.08.002Reference page.

References

Links

• Thomas Cavalier-Smith.Royalsociety.org