Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation (Q46300389)

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Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation

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English	Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation	scientific article	Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation

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scholarly article

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Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/28950365

Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation(English)

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Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/28950365

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based on heuristic

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based on heuristic

inferred from title

2

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Europe PubMed Central

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https:// ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28950365%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Andrew J. Roger

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Andrew J Roger

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Europe PubMed Central

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https:// ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28950365%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

1

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Huai-Chun Wang

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Europe PubMed Central

PubMed publication ID

31 May 2020

https:// ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28950365%20AND%20SRC:MED&resulttype=core&format=json

author name string

Edward Susko

3

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Europe PubMed Central

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31 May 2020

publication date

7 August 2017

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Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/28950365

Systematic Biology

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Europe PubMed Central

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https:// ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28950365%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

67

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31 May 2020

2

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31 May 2020

216-235

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Europe PubMed Central

PubMed publication ID

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31 May 2020

Evidence for a clade of nematodes, arthropods and other moulting animals

1 reference

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A new look at the statistical model identification

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The quickhull algorithm for convex hulls

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Phylogenomics and the reconstruction of the tree of life

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Another look at the root of the angiosperms reveals a familiar tale

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Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies

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Phylogenomics reveals deep molluscan relationships

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PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

1 reference

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A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

1 reference

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21 January 2018

PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment

1 reference

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21 January 2018

Modeling protein evolution with several amino acid replacement matrices depending on site rates.

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX068

21 January 2018

An improved general amino acid replacement matrix

1 reference

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21 January 2018

Empirical profile mixture models for phylogenetic reconstruction

1 reference

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21 January 2018

Identifying the Basal Angiosperm Node in Chloroplast Genome Phylogenies: Sampling One's Way Out of the Felsenstein Zone

1 reference

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21 January 2018

Ultrafast approximation for phylogenetic bootstrap

1 reference

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21 January 2018

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

1 reference

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21 January 2018

Resolving difficult phylogenetic questions: why more sequences are not enough

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21 January 2018

Combining multiple data sets in a likelihood analysis: which models are the best?

1 reference

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21 January 2018

On the statistical interpretation of site-specific variables in phylogeny-based substitution models

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Phylogenomic analyses unravel annelid evolution

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Estimation of rates-across-sites distributions in phylogenetic substitution models

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21 January 2018

On inconsistency of the neighbor-joining, least squares, and minimum evolution estimation when substitution processes are incorrectly modeled.

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21 January 2018

Phylogenomic Insights into Animal Evolution

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21 January 2018

A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny

1 reference

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21 January 2018

An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX068

21 January 2018

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

1 reference

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21 January 2018

Maximum-Likelihood Models for Combined Analyses of Multiple Sequence Data

1 reference

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21 January 2018

Identifiers

10.1093/SYSBIO/SYX068

1 reference

Europe PubMed Central

PubMed publication ID

https:// ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28950365%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https:// ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28950365%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

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